There is something so comforting about the aroma of apple and cinnamon baking in the oven. These Apple Cinnamon Greek Yogurt Muffins are the perfect way to warm up your kitchen and satisfy your sweet cravings without going overboard. They strike a lovely balance between indulgent and wholesome, making them a go-to option for breakfast, snack time, or even dessert.

What makes these muffins stand out is the creamy addition of Greek yogurt, which brings not only moisture and tanginess but also a good protein boost. Paired with fresh apple chunks and a swirl of cinnamon sugar, every bite is soft, warm, and deeply satisfying. They are easy to whip up and make your home smell heavenly.

Why You’ll Love These Apple Cinnamon Greek Yogurt Muffins

These muffins are all about soft texture and rich fall flavors. Greek yogurt keeps them light yet filling, and the chopped apples add bursts of juicy freshness. They freeze well, reheat beautifully, and are perfect for meal prepping. Whether you’re looking for a healthy treat for the kids or a cozy bite with your morning coffee, these muffins fit the bill.

What Kind of Apples Should I Use?

For a nice contrast of sweetness and tartness, Granny Smith apples work beautifully. They hold up well during baking and balance the warm spices. If you prefer a sweeter profile, Honeycrisp or Fuji apples are also excellent choices. The key is to dice the apples small so they bake evenly and integrate seamlessly into the soft crumb of the muffin.

Ingredients for the Apple Cinnamon Greek Yogurt Muffins

Baking with simple, wholesome ingredients makes all the difference. These muffins come together with pantry staples and a couple of fresh items.

All-purpose flour
Baking powder
Baking soda
Salt
Ground cinnamon
Nutmeg
Brown sugar
Eggs
Vanilla extract
Greek yogurt
Vegetable oil
Milk
Apples (peeled and diced)

Each ingredient has a purpose here. Greek yogurt brings moisture and protein. Apples add natural sweetness and texture. Brown sugar enhances the spice and adds depth. Cinnamon and nutmeg turn these into the perfect fall treat.

How To Make the Apple Cinnamon Greek Yogurt Muffins

Step 1: Prep the Oven and Muffin Tin

Preheat your oven to 375°F. Line a muffin tin with paper liners or grease each cup lightly.

Step 2: Mix the Dry Ingredients

In a medium bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg.

Step 3: Combine the Wet Ingredients

In a separate large bowl, beat together the brown sugar, eggs, vanilla, yogurt, oil, and milk until smooth and well blended.

Step 4: Add the Apples

Fold the diced apples into the wet mixture.

Step 5: Combine Wet and Dry

Gradually add the dry ingredients to the wet, stirring gently until just combined. Avoid overmixing.

Step 6: Fill and Bake

Spoon the batter evenly into the muffin cups, filling each about 3/4 full. Bake for 18–22 minutes, or until a toothpick comes out clean.

Step 7: Cool and Enjoy

Let the muffins cool in the tin for a few minutes before transferring them to a wire rack.

How to Store and Serve These Muffins

These muffins are best enjoyed fresh out of the oven, but they store beautifully for later too. Once completely cooled, keep them in an airtight container at room temperature for up to 3 days. You can refrigerate them for up to a week or freeze for up to 2 months.

This recipe makes about 12 regular-sized muffins, making it ideal for a family breakfast, a brunch with friends, or a grab-and-go snack during busy mornings.

What to Serve With Apple Cinnamon Greek Yogurt Muffins?

Coffee or Chai Latte

A hot drink makes the cinnamon notes shine and gives that cozy morning vibe.

Vanilla Greek Yogurt

Pair a muffin with a dollop of yogurt for a creamy, protein-rich addition.

Fresh Berries

A handful of blueberries or raspberries adds a refreshing contrast to the warm muffin.

Nut Butter Spread

Almond or peanut butter works wonders spread over a halved muffin.

Scrambled Eggs

If you’re having these for breakfast, eggs make it more balanced.

Apple Butter or Jam

Highlight the apple flavor even more with a fruity spread.

Warmed Milk or Hot Chocolate

Especially for kids, a warm drink pairs nicely.

Want More Muffin Ideas with a Twist?

If you love these Apple Cinnamon Greek Yogurt Muffins, you’ll want to try more cozy, flavor-packed muffin and treat recipes like:

Save This Recipe For Later

📌 Save this recipe to your Pinterest dessert board so you can come back to it any time.

And let me know in the comments how yours turned out. Did you add nuts or go extra cinnamon? Maybe swapped apples for pears?

I love hearing how others make these recipes their own. Questions are welcome too let’s help each other bake smarter.

Explore beautifully curated health-boosting drinks and easy family treats on Zoe Recipes on Pinterest and discover your next baking obsession!

Conclusion

These Apple Cinnamon Greek Yogurt Muffins are the kind of recipe that makes everyday moments feel special. They’re warm, flavorful, and just sweet enough to brighten your morning or cozy up your afternoon. With nourishing Greek yogurt and chunks of real apple, they’re a wholesome twist on a classic muffin. Try them once, and you’ll find yourself baking them on repeat.

Apple Cinnamon Greek Yogurt Muffins

Why You’ll Love These Apple Cinnamon Greek Yogurt Muffins

What Kind of Apples Should I Use?

Ingredients for the Apple Cinnamon Greek Yogurt Muffins